Posted by: cbouyio | 17 July, 2015

The myths of bioinformatics software

Bits of DNA

So you’re an academic and you’ve written some bioinformatics software. You heard that:

1. Somebody will build on your code.

Nope. Ok, maybe not never but almost certainly not. There are many reasons for this. The primary reason in my view is that most bioinformatics software is of very poor quality (more on why this is the case in #2). Who wants to read junk software, let alone try to edit it or build on it? Most bioinformatics software is also targeted at specific applications. Biologists who use application specific software are typically not interested in developing or improving software because methods development is not their main interest and software development is not their best skill. In the computational biology areas I have worked in during the past 20 years (and I have reviewed/tested/examined/used hundreds or even thousands of programs) I can count the software programs that have been extended or developed…

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